Similar to previous investigators, we also found a high fraction of heterozygotes, both for
TYR and
OCA2, which cannot be explained by the carrier frequency alone.
22 23 Recently, deletions in the 3′ region of
TYR including exon 4 and 5 have been disclosed.
24 This mutation would not have been detected by our mutational screening strategy. Other explanations for missing mutations could be mutations abolishing normal splicing, mutations in the regulatory regions, or large deletions in the gene. RT-PCR analysis indicated a second unidentified mutation, possibly in the regulatory regions, abolishing expression of the apparently normal allele in four patients. Six patients showed exclusive expression of the wild-type allele. One of those has a frameshift mutation introducing a premature stop codon. Therefore, this allele is most likely degraded by nonsense-mediated decay (NMD), which is a cellular mechanism that specifically degrades mRNAs containing premature stop codons.
25 The remaining five heterozygous patients with only wild-type allele expression harbor missense mutations, and expression of the mutant allele was expected. However, recent studies show that nucleotide substitutions originally predicted to cause missense mutations or synonymous substitutions may affect splicing if they are located in exon splicing enhancer (ESE) or exon splice silencer (ESS) sequences.
26 27 In silico analyses using the ESE finder (http://rulai.cshl.edu/cgi-bin/tools/ESE/ provided in the public domain by the Zhang Lab, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY) and RESCUE-ESE (http://genes.mit.edu/burgelab/rescue-ese/ provided in the public domain by the Burge Laboratory, Massachusetts Institute of Technology, Cambridge, MA),
28 show that the missense mutations create/abolish ESE sites. Even though the results are not in total agreement, it is possible that some of the mutations cause splicing defects leading to NMD and consequently to no expression of the mutant allele. However, this theory is purely speculative, and RT-PCR analysis would have to be performed to validate it.